22 Best Payroll Software in The Philippines for 2024

In today’s fast-paced business environment, the efficiency of payroll processing is paramount. Payroll software has become a crucial tool to streamline payroll operations, ensuring employees are paid accurately and on time and managing deductions and taxes in compliance with local laws.

However, with the many payroll systems available in the Philippines, choosing the best for business needs can be challenging. The wrong solution could lead to costly errors, inefficiencies, and employee dissatisfaction, affecting the overall morale and productivity of the workplace.

Therefore, this article will delve into a curated list of the 22 best payroll software in the Philippines, aiming to guide businesses in making an informed decision that aligns with their operational requirements and long-term goals.

What is Payroll Software?

Payroll software is a tool designed to automate employee payment management. It covers various payroll tasks, including calculating wages, managing deductions for taxes and other benefits, and generating employee payslips.

Payroll system integrates with timekeeping and HR systems to ensure that all financial transactions related to employee compensation are accurate and compliant with local tax laws and regulations.

According to a survey conducted by the Philippine Institute of Certified Public Accountants (PICPA), 82% of participants reported that using payroll software simplified complying with Bureau of Internal Revenue (BIR) audits.

This software calculates employee pay based on hours worked, commissions, and other factors while accounting for taxes, social security contributions, and other deductions. It can also handle direct deposit information, produce detailed reports for financial analysis, and ensure compliance with employment and tax laws.

The benefits of using payroll software include:

1. Improve efficiency and accuracy: It reduces the time and effort required to process payroll manually while minimizing human errors in calculations, ensuring employees are paid correctly and on time.
2. Compliance: Keeps up-to-date with tax laws and regulations, reducing the risk of penalties for non-compliance.
3. Data safety: Offers secure storage and handling of sensitive employee financial information.
4. Cost-control: Lowers the cost of processing payroll by reducing the need for a large payroll department.
5. Employee access: Often includes employee portals where workers can view their pay slips and tax information and request time off, enhancing transparency and communication.

A payroll system is valuable for businesses looking to optimize their payroll processes, improve accuracy, and ensure compliance while providing a better employee experience.

20 Best Payroll Software in the Philippines 2024

Below are the 20 best payroll software for businesses in the Philippines, selected for their ability to meet the specific demands of the local market. This recommendation aims to help companies find payroll system software that enhances their payroll management and streamlines their operations.

1. HashMicro Payroll Software

HashMicro’s payroll software is a solution for businesses in the Philippines. It offers a comprehensive platform that simplifies payroll management. This software automates payroll processes, reduces manual errors, complies with local regulations, and saves valuable time for HR teams.

As a leading company in the software industry, HashMicro has built a strong reputation for reliability and excellence. Trusted by over 2,250 clients across various sectors, the software demonstrates its capability to address end-to-end business needs effectively.

One of HashMicro’s key strengths is its seamless integration with other modules and systems, enabling businesses to streamline operations from HR to financial management. With its proven track record and comprehensive solutions, HashMicro stands out as a top choice for businesses in the Philippines looking to improve operational efficiency and payroll management.

HashMicro payroll system offers advanced features to streamline and enhance various payroll management. The features include:

1. Daily and Hourly Worker Payslip Management: This feature allows you to Customize payslips for employees paid hourly or daily.
2. Complete Overtime Management Linked to Payroll: This feature automatically calculates and compensates overtime in payroll.
3. Built-in Professional Templates for Contract & Payslip: The software uses pre-designed templates for consistent and professional documents.
4. Fully Localized Payroll with Tax Calculation: HashMicro software complies with Philippine tax laws, ensuring accurate tax deductions.
5. Approval Delegation with Auto Follow-Up Notification: This allows the delegate payroll approvals and receive automated follow-up notifications.
6. Mobile Apps for Employee Self-Service: Employees can access payroll, request time off, and update details via mobile.
7. In-Depth Leaves, Payroll, Expenses, Overtime, Attendance Reporting: HashMicro Generates detailed reports to aid decision-making and compliance.

Suitable for: HashMicro Payroll Software is suitable for Philippine businesses seeking an all-in-one payroll management solution and can cover end-to-end business processes.

The pricing scheme, viewed by clicking the banner below, provides detailed insight into how HashMicro software can meet your business requirements.

2. Freshbooks

FreshBooks integrates with various payroll system to ensure users can manage their accounting and payroll needs within a unified platform. This approach allows users to maintain their financial and employee payment records seamlessly.

Below are some of the features that Freshbooks has to offer:

1. Expense tracking
2. Invoicing and payment processing
3. Employee time tracking
4. Financial reporting

Suitable for: Freshbooks payroll system is ideal for Philippines businesses looking for flexibility in choosing their payroll provider while keeping their financial management integrated within one platform.

3. Papaya Global

Papaya Global is a cloud-based payroll system that specializes in providing global payroll software, employee benefits, and compliance services for companies with international operations.

Here’s an overview of what Papaya Global offers:

1. Global payroll management
2. Compliance and risk management
3. Benefits administration
4. Real-time reporting and analytics

Suitable for: Papaya Global HR payroll software is best suited for enterprises with employees in multiple countries or those planning to expand internationally.

4. Keka Payroll Software

Keka is cloud-based online payroll software philippines that combines a range of features to simplify payroll processing, statutory compliance, and HR management tasks.

Below are some of the features that Keka provides:

1. Automated payroll processing
2. Employee self-service portal
3. Expense management
4. Reporting and analytics

Suitable for: Keka Payroll system is ideal for businesses seeking to streamline their payroll processes while ensuring full legal compliance.

5. Justwork 

As a payroll system, Justworks provides a wide range of services, including automated payroll, benefits management, regulatory compliance, time and attendance tracking, and health insurance. It is designed to simplify HR processes and ensure their automation.  

Here are the features offered by Justwork:

• Multiple paid plans
• 24/7 support
• Run off-cycle payroll

6. Deel HR Payroll System Philippines

Deel is a payroll system in the Philippines designed to simplify the hiring, payment, and management of international employees and contractors. It stands out in the market for its comprehensive approach to managing the complexities of global workforce management.

Deel Payroll Software offers a wide range of functionalities, including:

1. Global payroll management
2. Contractor management
3. Local compliance
4. Advanced reporting

Suitable for: Deel payroll system is ideal for businesses in the Philippines that value the flexibility of hiring global talent and are looking for an all-encompassing platform that addresses payroll, compliance, and payments across borders.

7. Quickbooks Online Payroll

QuickBooks Payroll is an employee payroll system developed by Intuit that is designed to integrate seamlessly with QuickBooks accounting software. It offers a straightforward and efficient way to manage payroll and related tasks.

This software offers a wide range of features, including:

1. Payroll management
2. Tax calculations
3. Benefits management
4. Employee self-service portal

Suitable for: Quickbooks Payroll Software is especially beneficial for businesses prioritizing ease of use and seeking reliable tax handling capabilities.

8. Allsec HR Payroll

Allsec HR Payroll Software is a comprehensive payroll management solution designed by Allsec Technologies. Its Payroll system is tailored to streamline and enhance the payroll and HR operations of businesses of various sizes.

Below are the features that Allsec HR Payroll provides:

1. Automated payroll processing
2. Employee self-service portal
3. Benefits administration
4. Reporting and analytics

Suitable for: Allsec HR Payroll Software is ideally suited for medium to large enterprises that require a comprehensive and scalable payroll and HR solution. It is particularly beneficial for businesses with complex payroll needs, such as those operating in multiple countries or industries with specific compliance requirements.

9. peopleHum Payroll Software

peopleHum is an all-in-one Human Capital Management (HCM) platform that aims to automate HR processes. Among its features, people include payroll software designed to simplify and streamline the payroll process.

Some of the comprehensive features of peopleHum payroll software include:

1. Automated payroll processing
2. Compliance management
3. Self-service portal
4. Reporting and analytics

Suitable for: peopleHum is ideal for businesses looking for a comprehensive solution that manages payroll and integrates with other core HR functions.

10. Spine Payroll Software Philippines

Spine Payroll Software is a comprehensive payroll system designed to streamline payroll processes, statutory compliance, and HR functionalities for businesses in the Philippines.

Let’s delve into the features offered by Spine:

1. Automated payroll processing
2. Compliance management
3. Employee self-service portal
4. Customizable reports

Suitable for: Spine Payroll Software is particularly well-suited for businesses of all sizes in the Philippines looking for a comprehensive, integrated payroll system.

11. SAP SuccessFactors

SAP SuccessFactors is a comprehensive solution designed to manage the payroll operations of organizations across various industries. It is a part of SAP Human Capital Management system, providing tools to handle payroll processing, tax calculations, benefits administration, and compliance with local and global regulations.

Below are some of the features that SAP provides:

1. Time and attendance management
2. Tax and compliance management
3. Self-service portals
4. Reporting and analytics

Suitable for: Businesses already using SAP’s suite of products will benefit from the seamless integration of SAP Payroll with other SAP modules.

12. Deskera Payroll System Philippines

Deskera Payroll Software is a cloud-based payroll system designed to streamline payroll processes and ensure accurate and efficient payroll operations. It is part of Deskera’s integrated business platform, which also includes ERP, CRM, and HRMS solutions.

Below are the comprehensive suite of features that Deskera provides:

1. Automated payroll processing
2. Benefits management
3. Direct deposit and paychecks
4. Time and attendance integration

Suitable for: Deskera Payroll system is ideally suited for businesses looking for a comprehensive, integrated business management solution that includes payroll. 

13. ZingHR 

ZingHR is a cloud-based payroll software designed for businesses of various sizes. It aims to offer solutions for managing human resources, with a particular focus on streamlining payroll processes.

Here’s a detailed look at the features of ZingHR:

1. Automated payroll processing
2. Compliance management
3. Time and attendance management
4. Analytics and reporting

Suitable for: ZingHR is best suited for businesses looking for a comprehensive payroll system Philippines that not only simplifies payroll processing but also supports broader HR functions like talent management and performance evaluation.

14. GreatdayHR Payroll System Philippines

As a payroll management application, GreatdayHR enables automatic salary calculation based on attendance, overtime, and benefits data, thus reducing manual errors. In addition, this system makes it easy for companies to calculate and deduct taxes following applicable regulations and ensure compliance with labor regulations.

Here are the features offered by GreatdayHR:  

• Automated Payroll Processing 
• Tax and Compliance Management  
• Payroll Disbursement
• Payroll Reports and Analytics

Suitable for: Its features designed to comply with Philippine payroll regulations make GreatdayHR a good fit for companies seeking an all-in-one payroll management system.

15. PayrollHero

PayrollHero is a cloud-based payroll and scheduling software designed for Southeast Asian businesses. It aims to streamline HR processes focusing on employee happiness, emphasizing tools that engage workers while accurately tracking time and processing payroll. Here’s a closer look at what it offers:

1. Automated payroll processing
2. Compliance management
3. Employee self-service portal
4. Real-time analytics

Suitable for: PayrollHero is ideal for retail, restaurant, and BPO businesses in looking for a comprehensive HR solution that automates payroll and enhances workforce management.

16. ADP Payroll Software Philippines

The ADP system is designed to serve companies of all sizes, from small businesses to large corporations. With ADP, companies can automate many HR-related administrative processes, reduce manual errors, and ensure payroll and employee management run smoothly and efficiently. ADP also offers various reports and analytics that assist management in making data-driven decisions regarding their workforce.

Here are the features offered by ADP:

• Benefits Administration
• Talent Management
• Compliance Management

Suitable for: ADP cloud-based payroll system is particularly well-suited for businesses already using ADP suite of products or those looking to integrate their payroll with other business processes in a seamless ecosystem.

17. Gusto

Gusto is a cloud-based HR system that automates the payroll management process. It also focuses on integration with various employee benefit programs such as health insurance and pension. Thus, users can run various business needs in one application. 

Here are the features offered by Gusto:

• Tax Filing and Compliance
• Employee Self-Service
• Payroll Reports and Analytics

Suitable for: Gusto online payroll is well-suited for businesses in the Philippines seeking a payroll solution that is compliant with local regulations and easy to use.

18. Paychex Payroll System Philiipines

Paychex is a human resource (HR) and payroll system and service designed to help companies manage various administrative aspects related to employees. The system offers solutions that include payroll, benefits management, regulatory compliance, time and attendance tracking, and other HR-related services.

Here are the features offered by Paychex:

• Tax Filing
• Time Tracking
• Analytics and Reporting
• Compliance

Suitable for: Paychex payroll software Philippines is best suited for businesses that require a robust, scalable employee payroll system capable of handling complex payroll calculations, compliance requirements, and global payroll needs.

19. Paylite Payroll Software

Paylite Payroll Software is a comprehensive HR and payroll management solution developed by Citytech Software. It aims to streamline payroll operations while ensuring compliance with the region’s legal and regulatory requirements.

Let’s delve into its comprehensive suite of features:

1. Localized payroll management
2. Employee self-service portal
3. Comprehensive reporting

Suitable for: Paylite’s localization features make it an excellent choice for businesses needing a payroll solution that aligns with the region’s specific legal and regulatory frameworks.

20.  Rippling

Rippling is a payroll application designed to help companies manage payroll processes more efficiently and accurately. It offers automatic salary calculation, tax management, reporting, and digital payment features. In addition, Rippling can help manage employee data, process benefits, and ensure compliance with applicable tax regulations. 

Here are the features offered by Rippling:

• Payroll Management
• Time and Attendance Tracking
• Customizable Workflows
• Employee Onboarding

Suitable for: Rippling employee payroll system is particularly beneficial for companies in the tech, consulting, and creative industries that operate on a global scale and need to scale their workforce quickly and compliantly across borders.

21. PeopleApex

PeopleApex is an integrated global enterprise HR and payroll software designed to streamline HR processes, payroll, and talent management for businesses of various sizes across different industries.

It offers a comprehensive suite of features to manage the complexities of modern workforce management, such as:

1. Global payroll management
2. Compliance management
3. Time and attendance management
4. Employee self-service portal

Suitable for: Its multi-country payroll capability makes PeopleApex valuable for companies with employees in various countries who must navigate the complexities of different tax and labor laws.

22.Paycor 

Paycor, which focuses on automation and analytics, helps manufacturers manage payroll more effectively and make data-driven decisions. Its features enable accurate payroll management, employee performance analysis, and detailed reporting, supporting better HR strategies. 

Here are the features offered by Paycor:

• Reporting and Dashboards
• User, Role, and Access Management
• Employee Self Service
• Payroll Entry
• Tax Calculation

How to Choose the Best Payroll Software for Business in Philippines

Choosing the best payroll software is critical for enterprises in the Philippines. Compliance with local tax laws, government mandates, and employee benefits is complex and vital for business operations.

The right software simplifies payroll processing, ensures compliance, enhances efficiency, and supports strategic payroll management. Here’s how Philippine enterprises can select the best payroll system for their needs:

1. Compliance with local regulations: The software must comply with Philippine tax laws and regulations. It should also automatically update in response to changes in legislation to maintain compliance.
2. Scalability and flexibility: Look for software that can scale with your business growth. Enterprises need the ability to handle a large and diverse employee base, multiple pay structures, and various employment types.
3. Integration capabilities: Choose software that integrates seamlessly with your existing HRIS, ERP systems, and other business tools. Integration ensures data consistency, reduces manual data entry, and streamlines business processes.
4. Functionalities: The ideal software should offer a comprehensive set of features such as time and attendance management, benefits administration, tax filing, and reporting capabilities.
5. Data security and privacy: The software must have robust security measures to protect against data breaches and ensure privacy. Look for features like encryption and multi-factor authentication.
6. Support and training: Adequate support and training are crucial for maximizing the benefits of payroll system software. Ensure the provider offers comprehensive support and reliable customer service to promptly address issues.
7. Vendor reputation and reliability: Consider feedback from current users in the Philippines about the software’s performance, reliability, and the vendor’s responsiveness to customer needs.

By following these key factors, you can narrow down your options and select payroll software that complies with Philippine regulations and supports your business’s specific needs and long-term goals. 

Conclusion

Selecting the best payroll software is a critical decision for enterprises in the Philippines. With the vast array of options available, it is essential to carefully assess each software’s features against your business to find the perfect match.

HashMicro is one of the best payroll system software available to Philippine enterprises. Its comprehensive features, scalability, and user-friendly interface make it a choice for businesses looking to streamline payroll processes efficiently.

Witness firsthand how HashMicro can streamline your payroll processes and support your business’ growth. Don’t miss this opportunity to elevate your payroll system—try the free demo now!

FAQ About Payroll Software

• What is payroll system Philippines?

  In the Philippines, payroll operates monthly, varying by employer and sector. Employers are required to pay salaries bi-weekly, with intervals not exceeding 16 days. Additionally, Philippine law mandates a 13th-month pay, granting employees a bonus equal to one month’s regular salary.

• What are the payroll rules in the Philippines?

  Employers in the Philippines must pay their employees bi-weekly or twice a month, with intervals of no more than 16 days. The law prohibits employers from making monthly-only payments but does allow weekly payments if desired.

• What is HR and payroll system?

  Human resources primarily focus on managing employee relations, while payroll handles employees’ financial compensation and the payment process. Although these departments have separate roles, they share overlapping responsibilities.

• Is payroll part of bookkeeping?

  Payroll and bookkeeping are different: Payroll is about paying employees, while bookkeeping involves recording all financial transactions in a business.