22 Best Cloud-Based Payroll Software in Philippines 2024

Drowning in payroll hassles? Missed cutoffs, miscalculated 13th-month pay, accidentally deviating from BIR tax tables, and SSS/PhilHealth contribution errors; sounds like a lot of work to tidy up! Kaya, the solution? Use payroll software to ease up payroll burdens.

However, there are so many payroll systems out there, so how do you know which one’s the most suitable? Huwag kang mag-alala, as HashMicro Payroll Software has everything a Filipino company might need, including BIR-CAS system, automated payroll, and various trackings to ensure accurate salary each time.

We’ve also provided a curated list of the best 22 cloud-based payroll software in the Philippines, so that you can make an objective consideration to choose the most suitable payroll application for your business.

Key Takeaways Choosing the wrong payroll software leads to costly errors and inefficiencies. Payroll systems simplify payroll, ensure compliance, and boost efficiency. Choosing the best payroll software is crucial for a business’s financial health. HashMicro’s comprehensive features make it an ideal online payroll choice for Philippine businesses.

What is Payroll Software?

Payroll software is a tool that automates the process of paying employees. It efficiently manages different types of compensation, including wages, salaries, bonuses, and commissions. Additionally, the software calculates deductions for taxes and benefits and generates payslips.

Payroll system integrates with timekeeping and HR systems to ensure that all financial transactions related to employee compensation are accurate and compliant with local tax laws and regulations.

According to a survey conducted by the Philippine Institute of Certified Public Accountants (PICPA), 82% of participants reported that using payroll software simplified complying with Bureau of Internal Revenue (BIR) audits.

This software calculates employee pay based on hours worked, commissions, and other factors while accounting for taxes, social security contributions, and other deductions. It can also handle direct deposit information, produce detailed reports for financial analysis, and ensure compliance with employment and tax laws.

The benefits of using payroll software include:

1. Improve efficiency and accuracy: It reduces the time and effort required to process payroll manually while minimizing human errors in calculations, ensuring employees are paid correctly and on time.
2. Compliance: Keeps up-to-date with tax laws and regulations, reducing the risk of penalties for non-compliance.
3. Data safety: Offers secure storage and handling of sensitive employee financial information.
4. Cost-control: Lowers the cost of processing payroll by reducing the need for a large payroll department.
5. Employee access: Often includes employee portals where workers can view their pay slips and tax information and request time off, enhancing transparency and communication.

A payroll system is valuable for businesses looking to optimize their payroll processes, improve accuracy, and ensure compliance while providing a better employee experience.

22 Best Cloud-Based Payroll Software in the Philippines 2024

Below are the 22 Best Cloud-Based Payroll Software in the Philippines 2024, selected for their ability to meet the specific demands of the local market. This recommendation aims to help companies find payroll system software that enhances their payroll management and streamlines their operations.

1. HashMicro Payroll System

HashMicro’s payroll software is a solution for businesses in the Philippines. It offers a comprehensive platform that simplifies payroll management. This software automates payroll processes, reduces manual errors, complies with local regulations, and saves valuable time for HR teams.

As a leading company in the software industry, HashMicro has built a strong reputation for reliability and excellence. Trusted by over 2,250 clients across various sectors, the software demonstrates its capability to address end-to-end business needs effectively.

One of HashMicro’s key strengths is its seamless integration with other modules and systems, enabling businesses to streamline operations from HR to financial management. With its proven track record and comprehensive solutions, HashMicro stands out as a top choice for businesses in the Philippines looking to improve operational efficiency and payroll management.

HashMicro payroll system offers advanced features to streamline and enhance various payroll management. The features include:

1. Daily and Hourly Worker Payslip Management: This feature allows you to Customize payslips for employees paid hourly or daily.
2. Complete Overtime Management Linked to Payroll: This feature automatically calculates and compensates overtime in payroll.
3. Built-in Professional Templates for Contract & Payslip: The software uses pre-designed templates for consistent and professional documents.
4. Fully Localized Payroll with Tax Calculation: HashMicro software complies with Philippine tax laws, ensuring accurate tax deductions.
5. Approval Delegation with Auto Follow-Up Notification: This allows the delegate payroll approvals and receive automated follow-up notifications.
6. Mobile Apps for Employee Self-Service: Employees can access payroll, request time off, and update details via mobile.
7. In-Depth Leaves, Payroll, Expenses, Overtime, Attendance Reporting: HashMicro Generates detailed reports to aid decision-making and compliance.

Pros	Cons
100% unlimited users without additional user fees It can be integrated into other systems, including accounting and HRIS Intuitive and user-friendly interface for easy navigation	Features cater to large enterprises and may not be ideal for small businesses

Suitable for: HashMicro Payroll Software is suitable for Philippine businesses seeking an all-in-one payroll management solution and can cover end-to-end business processes.

The pricing scheme, viewed by clicking the banner below, provides detailed insight into how HashMicro software can meet your business requirements.

2. Payroll.PH

Payroll.PH is cloud-based payroll software designed specifically for businesses in the Philippines. It provides an easy-to-use platform for automating payroll, tax calculations, and compliance with local labor laws.

Here are the features and offerings of Payroll.ph:

1. Government-compliant
2. Cloud-Based
3. Tax compliance

Pros	Cons
Local Tax Compliance High standard of safety	Limited International Support Limited Customization

Suitable for:  Payroll.PH is a reliable and cost-effective payroll solution for small to medium-sized businesses in the Philippines, offering local compliance.

3. ADP Philippines

The ADP system is designed to serve companies of all sizes, from small businesses to large corporations. With ADP, companies can automate many HR-related administrative processes, reduce manual errors, and ensure payroll and employee management run smoothly and efficiently. ADP also offers various reports and analytics that assist management in making data-driven decisions regarding their workforce.

Here are the features offered by ADP:

• Benefits Administration
• Talent Management
• Compliance Management

Pros	Cons
Comprehensive solution Easy implementation process	Relatively high cost Less suitable for medium to large-scale businesses There is a limit to the number of users

Suitable for: ADP cloud-based payroll system is particularly well-suited for businesses already using ADP suite of products or those looking to integrate their payroll with other business processes in a seamless ecosystem.

4. Jeonsoft

Jeonsoft is a leading software provider offering innovative solutions focused on streamlining business operations, particularly payroll and HR management. With its user-friendly and scalable platform, Jeonsoft helps businesses automate various HR tasks, ensuring efficiency, compliance, and accuracy in payroll processing.

Here are the features offered by Jeonsoft:

• Payroll Automation
• Tax Compliance
• Employee Self-Service

Pros	Cons
User-friendly Customizable	Cost may be higher for small business or startups Usability issues

Suitable for: Jeonsoft ideal for businesses seeking an efficient, scalable, and secure platform, though its pricing may be a consideration for smaller businesses.

5. Sprout Solutions

Sprout Solutions is one of the leading HR software companies in the Philippines. It is known for its deep understanding of local HR practices and government laws. Their cloud-based platform simplifies complex HR tasks, automating processes to reduce administrative workload while prioritizing employee well-being through wellness and financial assistance programs.

Let’s delve into its comprehensive suite of features:

1. Streamline your payroll system
2. Handle management effortlessly
3. Provide immediate financial support

Pros	Cons
Easy access on-the-go Financial support with InstaCash	Custom Pricing can be a bit expensive for small businesses Learning Curve

Suitable for: Sprout Solutions is perfect for businesses looking to simplify processes and enhance efficiency.

6. Payday.PH

Payday.PH is a full-service payroll business suite that’s automated, customizable, secured, and backed by reliable customer support. The platform simplifies tasks such as automated payroll processing, tax calculations, and many more.

Below is the comprehensive suite of features that Payday.PH provides:

1. Automated payroll processing
2. Tax Compliance
3. Payslip Generation
4. Automated Payroll Processing

Pros	Cons
Local Compliance Affordable	Limited Customization Basic Reporting

Suitable for: Businesses that require an efficient way to manage payroll while complying with Philippine labor laws and tax regulations.

7. PayrollMaster

PayrollMaster is a comprehensive payroll management solution designed to streamline payroll processes for businesses of all sizes. It offers an intuitive platform that automates payroll calculations, tax deductions, compliance, and reporting, making it easier for companies to manage employee compensation efficiently and accurately.

Below are some of the features of PayrollMaster:

1. Payroll Automation
2. Tax Calculation
3. Self-service portals

Pros	Cons
Scalability Compliance	Learning Curve Cost can be a bit expensive for small businesses

Suitable for: PayrollMaster is perfect for growing businesses looking to streamline their payroll processes and transition to a reliable payroll software solution.

8. GreatdayHR Payroll System Philippines

As a payroll management application, GreatdayHR enables automatic salary calculation based on attendance, overtime, and benefits data, thus reducing manual errors. In addition, this system makes it easy for companies to calculate and deduct taxes following applicable regulations and ensure compliance with labor regulations.

Here are the features offered by GreatdayHR:  

• Automated Payroll Processing 
• Tax and Compliance Management  
• Payroll Disbursement
• Payroll Reports and Analytics

Pros	Cons
User-friendly interface  Comes with comprehensive features	Integration limitations  Limited customization  Less responsive customer service

Suitable for: Its features designed to comply with Philippine payroll regulations make GreatdayHR a good fit for companies seeking an all-in-one payroll management system.

9. Deel HR Payroll System Philippines

Deel is a payroll system in the Philippines designed to simplify the hiring, payment, and management of international employees and contractors. It stands out in the market for its comprehensive approach to managing the complexities of global workforce management.

Deel Payroll Software offers a wide range of functionalities, including:

1. Global payroll management
2. Contractor management
3. Local compliance
4. Advanced reporting

Pros	Cons
Streamlined payments Flexibility	Complexity for users Cost may be higher compared to local solutions

Suitable for: Deel payroll system is ideal for businesses in the Philippines that value the flexibility of hiring global talent and are looking for an all-encompassing platform that addresses payroll, compliance, and payments across borders.

10. Freshbooks

FreshBooks integrates with various payroll systems to ensure users can manage their accounting and payroll needs within a unified platform. This approach allows users to maintain their financial and employee payment records seamlessly.

Below are some of the features that Freshbooks has to offer:

1. Expense tracking
2. Invoicing and payment processing
3. Employee time tracking
4. Financial reporting

Pros	Cons
Mobile Accessibility User-friendly interface  Flexible integration	Limited payroll features Need third-party payroll services Cost might increase

Suitable for: Freshbooks payroll system is ideal for Philippines businesses looking for flexibility in choosing their payroll provider while keeping their financial management integrated within one platform.

11.  Rippling

Rippling is a payroll application designed to help companies manage payroll processes more efficiently and accurately. It offers automatic salary calculation, tax management, reporting, and digital payment features. In addition, Rippling can help manage employee data, process benefits, and ensure compliance with applicable tax regulations. 

Here are the features offered by Rippling:

• Payroll Management
• Time and Attendance Tracking
• Customizable Workflows
• Employee Onboarding

Pros	Cons
Flexibility and scalability Wide integration	Steep learning curve High cost Not suitable for medium to large-scale businesses

Suitable for: Rippling employee payroll system is particularly beneficial for companies in the tech, consulting, and creative industries that operate on a global scale and need to scale their workforce quickly and compliantly across borders.

12. Papaya Global

Papaya Global is a cloud-based payroll system that specializes in providing global payroll software, employee benefits, and compliance services for companies with international operations.

Here’s an overview of what Papaya Global offers:

1. Global payroll management
2. Compliance and risk management
3. Benefits administration
4. Real-time reporting and analytics

Pros	Cons
EOR services Scalability Global reach	Complexity for users High implementation cost Customization limitations

Suitable for: Papaya Global HR payroll software is best suited for enterprises with employees in multiple countries or those planning to expand internationally.

13. Keka Payroll Software

Keka is cloud-based online payroll software in the Philippines that combines a range of features to simplify payroll processing, statutory compliance, and HR management tasks.

Below are some of the features that Keka provides:

1. Automated payroll processing
2. Employee self-service portal
3. Expense management
4. Reporting and analytics

Pros	Cons
User-friendly interface Remote access and real-time updates Integration capabilities	Regional focus Complexity for users High implementation cost

Suitable for: Keka Payroll system is ideal for businesses seeking to streamline their payroll processes while ensuring full legal compliance.

14. Quickbooks Online Payroll

QuickBooks Payroll is an employee payroll system developed by Intuit that is designed to integrate seamlessly with QuickBooks accounting software. It offers a straightforward and efficient way to manage payroll and related tasks.

This software offers a wide range of features, including:

1. Payroll management
2. Tax calculations
3. Benefits management
4. Employee self-service portal

Pros	Cons
Seamless integration Mobile Accessibility	Limited features Costs can add up with additional features and services

Suitable for: Quickbooks Payroll Software is especially beneficial for businesses prioritizing ease of use and seeking reliable tax handling capabilities.

15. Allsec HR Payroll 

Allsec HR Payroll Software is a comprehensive payroll management solution designed by Allsec Technologies. Its Payroll system is tailored to streamline and enhance the payroll and HR operations of businesses of various sizes.

Below are the features that Allsec HR Payroll provides:

1. Automated payroll processing
2. Employee self-service portal
3. Benefits administration
4. Reporting and analytics

Pros	Cons
Comprehensive features Compliance	Complexity Overhead for smaller operations

Suitable for: Allsec HR Payroll Software is ideally suited for medium to large enterprises that require a comprehensive and scalable payroll and HR solution. It is particularly beneficial for businesses with complex payroll needs, such as those operating in multiple countries or industries with specific compliance requirements.

16. peopleHum Payroll Software

peopleHum is an all-in-one Human Capital Management (HCM) platform that aims to automate HR processes. Among its features, people include payroll software designed to simplify and streamline the payroll process.

Some of the comprehensive features of peopleHum payroll software include:

1. Automated payroll processing
2. Compliance management
3. Self-service portal
4. Reporting and analytics

Pros	Cons
Comprehensive integration Intuitive user interface	Steep learning curve High implementation cost

Suitable for: peopleHum is ideal for businesses looking for a comprehensive solution that manages payroll and integrates with other core HR functions.

17. Spine Payroll Software Philippines

Spine Payroll Software is a comprehensive payroll system designed to streamline payroll processes, statutory compliance, and HR functionalities for businesses in the Philippines.

Let’s delve into the features offered by Spine:

1. Automated payroll processing
2. Compliance management
3. Employee self-service portal
4. Customizable reports

Pros	Cons
Regulatory compliance Customizable	Steep learning curve Implementation can be costly

Suitable for: Spine Payroll Software is particularly well-suited for businesses of all sizes in the Philippines looking for a comprehensive, integrated payroll system.

18. ZingHR 

ZingHR is a cloud-based payroll software designed for businesses of various sizes. It aims to offer solutions for managing human resources, with a particular focus on streamlining payroll processes.

Here’s a detailed look at the features of ZingHR:

1. Automated payroll processing
2. Compliance management
3. Time and attendance management
4. Analytics and reporting

Pros	Cons
User-friendly interface Remote access and easy updates	Complexity Steep learning curve

Suitable for: ZingHR is best suited for businesses looking for a comprehensive payroll system Philippines that not only simplifies payroll processing but also supports broader HR functions like talent management and performance evaluation.

19. PeopleApex

PeopleApex is an integrated global enterprise HR and payroll software designed to streamline HR processes, payroll, and talent management for businesses of various sizes across different industries.

It offers a comprehensive suite of features to manage the complexities of modern workforce management, such as:

1. Global payroll management
2. Compliance management
3. Time and attendance management
4. Employee self-service portal

Pros	Cons
Global capability Intuitive user interface	Complexity for users Cost may be higher for businesses with more complex needs

Suitable for: Its multi-country payroll capability makes PeopleApex valuable for companies with employees in various countries who must navigate the complexities of different tax and labor laws.

20. Justwork Payroll System Philippines

As a payroll system, Justworks provides a wide range of services, including automated payroll, benefits management, regulatory compliance, time and attendance tracking, and health insurance. It is designed to simplify HR processes and ensure their automation.  

Here are the features offered by Justwork:

• Multiple paid plans
• 24/7 support
• Run off-cycle payroll

Pros	Cons
Ease of Use Strong PEO Model	Limited Customization Relatively High Cost

21. Gusto

Gusto is a cloud-based HR system that automates the payroll management process. It also focuses on integration with various employee benefit programs such as health insurance and pension. Thus, users can run various business needs in one application. 

Here are the features offered by Gusto:

• Tax Filing and Compliance
• Employee Self-Service
• Payroll Reports and Analytics

Pros	Cons
All-in-one features  Responsive customer service	Relatively high implementation costs  Limitations on customization

Suitable for: Gusto online payroll is well-suited for businesses in the Philippines seeking a payroll solution compliant with local regulations and easy to use.

22. Breathe 

Breathe is a modern HR and payroll software designed to simplify and streamline people management for small businesses. With its user-friendly interface and cloud-based platform, Breathe helps businesses manage key HR tasks, including employee records, payroll, performance, and leave management

Here are the features offered by Breathe:

• Commitment-free plans
• Dedicated service and support
• Payroll Entry
• Tax Calculation

Pros	Cons
Flexible Ease of use	Limited customization It may not be robust enough for larger businesses

Suitable for: small and medium businesses looking to simplify processes and enhance efficiency in payroll system.

How to Choose the Best Payroll Software for Business in Philippines

Choosing the best payroll software is critical for enterprises in the Philippines. Compliance with local tax laws, government mandates, and employee benefits is complex and vital for business operations.

The right software simplifies payroll processing, ensures compliance, enhances efficiency, and supports strategic payroll management. Here’s how Philippine enterprises can select the best payroll system for their needs:

1. Compliance with local regulations: The software must comply with Philippine tax laws and regulations. It should also automatically update in response to changes in legislation to maintain compliance.
2. Scalability and flexibility: Look for software that can scale with your business growth. Enterprises need the ability to handle a large and diverse employee base, multiple pay structures, and various employment types.
3. Integration capabilities: Choose software that integrates seamlessly with your existing HRIS systems, ERP systems, and other business tools. Integration ensures data consistency, reduces manual data entry, and streamlines business processes.
4. Functionalities: The ideal software should offer a comprehensive set of features such as time and attendance management, benefits administration, tax filing, and reporting capabilities.
5. Data security and privacy: The software must have robust security measures to protect against data breaches and ensure privacy. Look for features like encryption and multi-factor authentication.
6. Support and training: Adequate support and training are crucial for maximizing the benefits of payroll system software. Ensure the provider offers comprehensive support and reliable customer service to address issues promptly.
7. Vendor reputation and reliability: Consider feedback from current users in the Philippines about the software’s performance, reliability, and the vendor’s responsiveness to customer needs.

By following these key factors, you can narrow down your options and select payroll software that complies with Philippine regulations and supports your business’s specific needs and long-term goals. 

Conclusion

Selecting the best payroll software is a critical decision for enterprises in the Philippines. With the vast array of options available, it is essential to carefully assess each software’s features against your business to find the perfect match.

HashMicro is one of the best payroll system software available to Philippine enterprises. Its comprehensive features, scalability, and user-friendly interface make it a choice for businesses looking to streamline payroll processes efficiently.

Witness firsthand how HashMicro can streamline your payroll processes and support your business’ growth. Don’t miss this opportunity to elevate your payroll system—try the free demo now!

FAQ About Payroll Software

• How does the payroll system work in the Philippines?

  In the Philippines, payroll operates monthly, varying by employer and industry. Employers must issue wages every two weeks, with intervals not exceeding 16 days. Additionally, the country mandates a 13th-month pay benefit, providing employees with an extra month’s salary as a bonus.

• What are the payroll rules in the Philippines?

  Employers in the Philippines must pay their employees bi-weekly or twice a month, with intervals of no more than 16 days. The law prohibits employers from making monthly-only payments but does allow weekly payments if desired.

• What is HR and payroll system?

  Human resources primarily focus on managing employee relations, while payroll handles employees’ financial compensation and the payment process. Although these departments have separate roles, they share overlapping responsibilities.

• Is payroll part of bookkeeping?

  Payroll and bookkeeping are different: Payroll is about paying employees, while bookkeeping involves recording all financial transactions in a business.